Journal: International Journal of Biological Sciences

Article Title: Wnt/β-catenin Signaling Inhibitors suppress the Tumor-initiating properties of a CD44 + CD133 + subpopulation of Caco-2 cells

doi: 10.7150/ijbs.58612

Figure Lengend Snippet: Expression of CD44 and CD133 proteins in colorectal cancer cell lines

Article Snippet: Standard cell surface flow cytometry was used to characterize Caco-2, HCT116, HT29, SW480, and DLD1 cells with FITC (fluorescein-5-isothiocyanate)-conjugated mouse anti-human CD44 (G44-26, BD Biosciences) and PE (phycoerythrin)-conjugated mouse anti-human CD133 (AC133, Miltenyi Biotech) antibodies.

Techniques: Expressing

Journal: International Journal of Biological Sciences

Article Title: Wnt/β-catenin Signaling Inhibitors suppress the Tumor-initiating properties of a CD44 + CD133 + subpopulation of Caco-2 cells

doi: 10.7150/ijbs.58612

Figure Lengend Snippet: Isolation and analysis of Caco-2 subpopulations expressing CD44 or/and CD133. (A) Differences in the expression of CD44 and CD133 surface markers between colorectal cancer cells. Five colorectal cancer cell lines (Caco-2, HCT116, HT29, SW480, and DLD1) were cultured in MEM/EBSS (minimal essential medium with Earle's balanced salt solution) supplemented with 10% heat-inactivated FBS (fetal bovine serum), stained with specific monoclonal antibodies to CD44 (FITC-conjugated) and CD133 (PE-conjugated), and analyzed by flow cytometry. The results are expressed as the percentage of CD44 - CD133 - , CD44 + CD133 - , CD44 - CD133 + , or CD44 + CD133 + cells in the total cell population. (B) Flow cytometric analyses of CD44 - CD133 - , CD44 - CD133 + , and CD44 + CD133 + Caco-2 fractions to evaluate the efficiency of isolation. After FACS isolation, the percentage of CD44 - CD133 - , CD44 - CD133 + , and CD44 + CD133 + cells within the total population increased to 90.8% ± 4.8%, 98.1% ± 1.1%, and 88.6% ± 4.0%, respectively. (C) Morphological characteristics of CD44 - CD133 - , CD44 - CD133 + , and CD44 + CD133 + Caco-2 cells. CD44 - CD133 - , CD44 - CD133 + , and CD44 + CD133 + cells (5 × 10 3 ) were plated into 35 mm dishes, cultured for 24 hours, and examined using a confocal laser scanning microscope (LSM5 Pascal, Carl Zeiss Co., Ltd.; 200× original magnification). Scale bars, 100 μm. (D) Cell size distribution of CD44 - CD133 - , CD44 - CD133 + , and CD44 + CD133 + Caco-2 cells. The x -axis of the plot represents forward scatter, indicating cell size, and the y -axis represents side scatter, indicating cell number. Curves denote CD44 - CD133 - (green line), CD44 - CD133 + (red line), and CD44 + CD133 + (black line) cells.

Article Snippet: Standard cell surface flow cytometry was used to characterize Caco-2, HCT116, HT29, SW480, and DLD1 cells with FITC (fluorescein-5-isothiocyanate)-conjugated mouse anti-human CD44 (G44-26, BD Biosciences) and PE (phycoerythrin)-conjugated mouse anti-human CD133 (AC133, Miltenyi Biotech) antibodies.

Techniques: Isolation, Expressing, Cell Culture, Staining, Flow Cytometry, Laser-Scanning Microscopy

Journal: International Journal of Biological Sciences

Article Title: Wnt/β-catenin Signaling Inhibitors suppress the Tumor-initiating properties of a CD44 + CD133 + subpopulation of Caco-2 cells

doi: 10.7150/ijbs.58612

Figure Lengend Snippet: Growth characteristics and cell cycle analysis of CD44 - CD133 - , CD44 - CD133 + , and CD44 + CD133 + Caco-2 cells. (A) Colony morphology of CD44 - CD133 - , CD44 - CD133 + , and CD44 + CD133 + Caco-2 cells. CD44 - CD133 - , CD44 - CD133 + , and CD44 + CD133 + cells (1 × 10 4 ) were plated and cultured for 8 days. Cells were monitored at 2 day intervals under an inverted phase-contrast microscope (IX71; Olympus). Scale bars, 100 μm. (B) Growth curve of CD44 - CD133 - , CD44 - CD133 + , and CD44 + CD133 + Caco-2 cells. Cells were seeded at 1 × 10 4 cells per 35 mm dish and counted at 2 day intervals using a hemocytometer for a total of 8 days. Statistical significance was determined using unpaired Student's t -tests. ** p < 0.01 versus control group. (C) Cell cycle distribution of CD44 - CD133 - , CD44 - CD133 + , and CD44 + CD133 + Caco-2 cells. The DNA content of CD44 - CD133 - (left panel), CD44 - CD133 + (middle panel), and CD44 + CD133 + (right panel) cells was measured by fluorescence after propidium iodide staining. M1, M2, and M3 represent the G0/G1, S, and G2/M phases, respectively. Values represent the mean ± SD for three independent experiments. (D) Proportion of CD44 - CD133 - , CD44 - CD133 + , and CD44 + CD133 + Caco-2 cells at G0/G1, S, and G2/M phase. The percentage of cells at G0/G1, S, and G2/M are shown after flow cytometry. Values represent the mean ± SD for three independent experiments. (E) Upregulation of Ki-67 expression in CD44 + CD133 + Caco-2 cells. The protein expression level of Ki-67 in CD44 - CD133 - , CD44 - CD133 + , and CD44 + CD133 + cells were assessed by western blotting (WB) (upper panel). After resolving the extracts by SDS-PAGE, the samples were analyzed by immunoblotting using anti-Ki-67 (SP6; Abcam) or anti-β-Actin (AbC-2002; AbClon Inc.) antibodies (Ab). β-Actin served as a loading control. Three independent experiments gave similar results.

Article Snippet: Standard cell surface flow cytometry was used to characterize Caco-2, HCT116, HT29, SW480, and DLD1 cells with FITC (fluorescein-5-isothiocyanate)-conjugated mouse anti-human CD44 (G44-26, BD Biosciences) and PE (phycoerythrin)-conjugated mouse anti-human CD133 (AC133, Miltenyi Biotech) antibodies.

Techniques: Cell Cycle Assay, Cell Culture, Microscopy, Fluorescence, Staining, Flow Cytometry, Expressing, Western Blot, SDS Page

Journal: International Journal of Biological Sciences

Article Title: Wnt/β-catenin Signaling Inhibitors suppress the Tumor-initiating properties of a CD44 + CD133 + subpopulation of Caco-2 cells

doi: 10.7150/ijbs.58612

Figure Lengend Snippet: Evaluation of the tumorigenicity of the CD44 + CD133 + Caco-2 cells in vivo . (A) Cytofluorimetric cell sorting of double-labeled parental (left panel), CD44 + CD133 + -positive (middle panel), and CD44 + CD133 + -negative (ΔCD44 + CD133 + , right panel) Caco-2 cells. Sorted cells were re-analyzed shortly after the initial sorting. Cell purities are presented as the percentage of selected cells in the sort fraction. (B) Analysis of serum requirements of Caco-2 cells expressing CD44 and CD133. CD44 + CD133 + and ΔCD44 + CD133 + cells were cultured in MEM/EBSS supplemented with 2% (v/v) FBS for 9 days and then stained with crystal violet to visualize cells. (C) Effect of serum starvation on CD44 + CD133 + and ΔCD44 + CD133 + Caco-2 cell proliferation. After serum starvation, total cell numbers were determined by counting at day 9. CD44 + CD133 + (blue bar) and ΔCD44 + CD133 + cells (green bar) were maintained by MEM/EBSS supplemented with 2% (v/v) FBS. Each bar represents the mean ± SD of three independent experiments. An unpaired Student's t -test was used to determine statistical significance. ** p < 0.01 versus control group. (D) Growth of mouse xenografts generated after subcutaneous injection of unsorted (parental) or purified (CD44 + CD133 + or ΔCD44 + CD133 + ) Caco-2 cells. The parental, CD44 + CD133 + , or ΔCD44 + CD133 + cells were sorted by flow cytometry and then subcutaneously injected into 8-week-old NSG mice (n = 7). Tumor development was observed at 2 day intervals for a total of 76 days. The volume of palpable tumors derived from parental (red triangles), CD44 + CD133 + (blue circles), or ΔCD44 + CD133 + (green squares) cells was measured and plotted as mean increases ± SD. An unpaired Student's t -test was used to determine statistical significance. * p < 0.05 and ** p < 0.01 versus control group. (E) Photograph of tumor xenografts generated after subcutaneous injection of parental, CD44 + CD133 + , or ΔCD44 + CD133 + Caco-2 cells. The representative tumor photograph was taken 76 days after injection. (F) Mass of tumors from NSG mice injected with parental, CD44 + CD133 + , or ΔCD44 + CD133 + Caco-2 cells. Tumor mass in individual NSG mice was measured at 76 days after subcutaneous injection (n = 7) and is plotted as mean increases ± SD. An unpaired Student's t -test was used to determine statistical significance. ** p < 0.01 versus control group.

Article Snippet: Standard cell surface flow cytometry was used to characterize Caco-2, HCT116, HT29, SW480, and DLD1 cells with FITC (fluorescein-5-isothiocyanate)-conjugated mouse anti-human CD44 (G44-26, BD Biosciences) and PE (phycoerythrin)-conjugated mouse anti-human CD133 (AC133, Miltenyi Biotech) antibodies.

Techniques: In Vivo, FACS, Labeling, Expressing, Cell Culture, Staining, Generated, Injection, Purification, Flow Cytometry, Derivative Assay

Journal: International Journal of Biological Sciences

Article Title: Wnt/β-catenin Signaling Inhibitors suppress the Tumor-initiating properties of a CD44 + CD133 + subpopulation of Caco-2 cells

doi: 10.7150/ijbs.58612

Figure Lengend Snippet: Evaluation of the tumorigenicity of CD44 + CD133 + cells from primary xenografts. (A) Growth of mouse secondary xenografts generated after subcutaneous injection of CD44 + CD133 + or ΔCD44 + CD133 + cells from primary tumors. CD44 + CD133 + or ΔCD44 + CD133 + cells from primary xenografts were injected subcutaneously into NSG mice (n = 4). Tumor development was observed at 2 day intervals for a total of 64 days. The volume of palpable tumors derived from CD44 + CD133 + (blue circles) or ΔCD44 + CD133 + (green squares) cells is plotted as mean ± SD. An unpaired Student's t -test was used to determine statistical significance. ** p < 0.01 versus control group. (B) Photograph of secondary xenografts generated after subcutaneous injection of CD44 + CD133 + or ΔCD44 + CD133 + cells from primary xenograft. Tumor photograph was taken 64 days after cell injection. (C) Mass of tumors from NSG mice subcutaneously injected with CD44 + CD133 + or ΔCD44 + CD133 + cells from primary xenografts. Tumor mass in individual NSG mice was estimated at 64 days after cell injection (n = 4) and is displayed as mean ± SD. An unpaired Student's t -test was used to determine statistical significance. ** p < 0.01 versus control group. (D) Expression of CD44 and CD133 in secondary xenograft. Immunohistochemical staining of secondary xenograft demonstrated that CD44 and CD133 expression was preserved during secondary tumor development. Images are 100× (bottom panels) or 200× (top panels) magnification. Scale bars indicate 100 μm.

Article Snippet: Standard cell surface flow cytometry was used to characterize Caco-2, HCT116, HT29, SW480, and DLD1 cells with FITC (fluorescein-5-isothiocyanate)-conjugated mouse anti-human CD44 (G44-26, BD Biosciences) and PE (phycoerythrin)-conjugated mouse anti-human CD133 (AC133, Miltenyi Biotech) antibodies.

Techniques: Generated, Injection, Derivative Assay, Expressing, Immunohistochemical staining, Staining

Journal: International Journal of Biological Sciences

Article Title: Wnt/β-catenin Signaling Inhibitors suppress the Tumor-initiating properties of a CD44 + CD133 + subpopulation of Caco-2 cells

doi: 10.7150/ijbs.58612

Figure Lengend Snippet: Activation of the Wnt/β-catenin signaling pathway in CD44 + CD133 + Caco-2 cells. (A) CD44 - CD133 + and CD44 + CD133 + Caco-2 cells have distinct gene expression profiles. Scatter plot analysis of the gene expression pattern in CD44 + CD133 + and CD44 - CD133 + cells revealed distinct gene expression profiles between two subpopulations. Two-fold differences are defined above and below the lines parallel to the diagonal line. (B) RT-PCR analysis of genes involved in the canonical Wnt/β-catenin pathway in CD44 - CD133 + and CD44 + CD133 + Caco-2 cells. RT-PCR analysis of TCF4 , Lef1 , c- Myb , Id3 , AR , and Dkk1 mRNA expression was performed in CD44 - CD133 + and CD44 + CD133 + Caco-2 cells. β-actin was used for normalization. Following RT-PCR, each product was analyzed on agarose gels and stained with ethidium bromide. (C) TaqMan qPCR of Wnt/β-catenin pathway genes. Quantitative real-time PCR reactions were performed to analyze the relative expression of TCF4 , Lef1 , c- Myb , Id3 , AR , and Dkk1 in CD44 - CD133 + and CD44 + CD133 + cells, and normalized to that of β-actin . Representative mean ± SD from an assay performed in triplicate; two additional experiments gave similar results. An unpaired Student's t -test was used to determine statistical significance. ** p < 0.01 versus control group. (D) β-catenin activation in CD44 + CD133 + Caco-2 cells. Total cell extracts were prepared from CD44 - CD133 + and CD44 + CD133 + cells. The lysates were separated by SDS-PAGE and transferred to a PVDF membrane. The membrane was immunoblotted with anti-phospho-β-catenin (Ser552; Cell Signaling Technology), anti-β-catenin (BD Transduction Laboratories), or anti-GAPDH (V-18; Santa Cruz Biotechnology) antibodies. Western blot demonstrates higher levels of phospho-β-catenin (Ser552) in CD44 + CD133 + cells than in CD44 - CD133 + cells. (E) Transcriptional activation of the TOP reporter in CD44 + CD133 + Caco-2 cells. The reporter plasmids, pTOPFlash (TOP, a wild-type reporter) or pFOPFlash (FOP, a mutant reporter), were transfected into CD44 - CD133 + or CD44 + CD133 + cells, respectively (along with a Renilla luciferase reporter to enable correction for transfection efficiencies), and the luciferase activity was determined. Fold induction (TOP/FOP) is expressed relative to that of the empty expression vector. Data represent mean ± SD for at least three experiments. An unpaired Student's t -test was used to determine statistical significance. ** p < 0.01 versus control group.

Article Snippet: Standard cell surface flow cytometry was used to characterize Caco-2, HCT116, HT29, SW480, and DLD1 cells with FITC (fluorescein-5-isothiocyanate)-conjugated mouse anti-human CD44 (G44-26, BD Biosciences) and PE (phycoerythrin)-conjugated mouse anti-human CD133 (AC133, Miltenyi Biotech) antibodies.

Techniques: Activation Assay, Expressing, Reverse Transcription Polymerase Chain Reaction, Staining, Real-time Polymerase Chain Reaction, SDS Page, Transduction, Western Blot, Mutagenesis, Transfection, Luciferase, Activity Assay, Plasmid Preparation

Journal: International Journal of Biological Sciences

Article Title: Wnt/β-catenin Signaling Inhibitors suppress the Tumor-initiating properties of a CD44 + CD133 + subpopulation of Caco-2 cells

doi: 10.7150/ijbs.58612

Figure Lengend Snippet: Importance of the Wnt signaling pathway in CD44 + CD133 + Caco-2 cell proliferation. (A) Effects of XAV939 treatment on CD44 + CD133 + Caco-2 cell colony formation. FACS-isolated CD44 + CD133 + cells were plated in a 12-well plate at a cell density of 1 × 10 4 per well and cultured in medium containing the indicated concentration of XAV939. Six days after XAV939 treatment, colony formation assays were carried out, and colonies were stained using crystal violet (0.05%) solution. A representative image of three separate experiments is shown. (B) Time-dependent effects of XAV939 treatment on CD44 + CD133 + Caco-2 cell growth and morphology. CD44 + CD133 + cells were cultured for 6 days in the absence or presence of the indicated concentration of XAV939. Cells were monitored once each day using an inverted phase-contrast microscope for 6 days. Scale bars indicate 100 μm. Four separate experiments produced similar results. (C) Determination of half-maximal inhibitory concentration of XAV939 in CD44 + CD133 + Caco-2 tumor-initiating cells. Increasing concentrations of XAV939 were added to CD44 + CD133 + cells, and growth inhibition was monitored by cell counting. Cell growth is presented as a percentage of the control (DMSO) at a given concentration of XAV939. Data are presented as the mean ± SD of four separate experiments. The IC 50 value of XAV939 was calculated from a sigmoidal concentration-response curve fitted using SoftMax Pro software.

Article Snippet: Standard cell surface flow cytometry was used to characterize Caco-2, HCT116, HT29, SW480, and DLD1 cells with FITC (fluorescein-5-isothiocyanate)-conjugated mouse anti-human CD44 (G44-26, BD Biosciences) and PE (phycoerythrin)-conjugated mouse anti-human CD133 (AC133, Miltenyi Biotech) antibodies.

Techniques: Isolation, Cell Culture, Concentration Assay, Staining, Microscopy, Produced, Inhibition, Cell Counting, Software

Journal: International Journal of Biological Sciences

Article Title: Wnt/β-catenin Signaling Inhibitors suppress the Tumor-initiating properties of a CD44 + CD133 + subpopulation of Caco-2 cells

doi: 10.7150/ijbs.58612

Figure Lengend Snippet: IWR-1 inhibits proliferation of CD44 + CD133 + Caco-2 cells. (A) IWR-1 suppresses colony formation in CD44 + CD133 + Caco-2 cells. CD44 + CD133 + Caco-2 cells were plated in a 12-well plate at a density of 1 × 10 4 per well and cultured in medium containing the indicated concentration of IWR-1. Six days after IWR-1 treatment, colony formation assays were carried out, and colonies were stained with 0.05% crystal violet. Representative crystal violet-stained images are presented. Three separate experiments produced similar results. (B) Effects of IWR-1 on CD44 + CD133 + Caco-2 cell proliferation. CD44 + CD133 + cells were exposed to increasing concentrations of IWR-1, and growth inhibition was monitored every day for 6 days. Scale bars indicate 100 μm. Representative images are shown from four separate experiments, which yielded similar results. (C) Determination of half-maximal inhibitory concentration of IWR-1. Increasing concentrations of IWR-1 were added to CD44 + CD133 + cells, and growth inhibition was monitored by cell counting. Cell growth is presented as the percentage of the control (DMSO) value at a given concentration of IWR-1. Data are presented as the mean ± SD of four separate experiments. The IC 50 value for IWR-1 was calculated from a sigmoidal concentration-response curve fitted using SoftMax Pro software.

Article Snippet: Standard cell surface flow cytometry was used to characterize Caco-2, HCT116, HT29, SW480, and DLD1 cells with FITC (fluorescein-5-isothiocyanate)-conjugated mouse anti-human CD44 (G44-26, BD Biosciences) and PE (phycoerythrin)-conjugated mouse anti-human CD133 (AC133, Miltenyi Biotech) antibodies.

Techniques: Cell Culture, Concentration Assay, Staining, Produced, Inhibition, Cell Counting, Software

Journal: International Journal of Biological Sciences

Article Title: Wnt/β-catenin Signaling Inhibitors suppress the Tumor-initiating properties of a CD44 + CD133 + subpopulation of Caco-2 cells

doi: 10.7150/ijbs.58612

Figure Lengend Snippet: XAV939 suppresses CD44 + CD133 + cell-induced tumor formation. (A) Mean body weight of NSG mice following XAV939 treatment. To evaluate the potential toxicity of XAV939, the body weight of NSG mice was monitored for the duration of the experiment. Mice showed no notable weight loss. An unpaired Student's t -test was applied to determine statistical significance. p = non-significant (NS) for >0.05. (B) Decrease in tumor volume after XAV939 treatment. Tumor-bearing mice (tumor volume = 15-25 mm 3 , randomized into two groups) were intraperitoneally injected with vehicle or XAV939 (20 mg/kg) once every 3 days for 48 days, and tumor size was monitored. An unpaired Student's t -test was applied to determine statistical significance. ** p < 0.01 versus control group. (C) Quantification of tumor growth following XAV939 or control treatment. Tumor mass derived from vehicle- or XAV939-treated mice is presented as mean mass increases ± SD. An unpaired Student's t -test was applied to determine statistical significance. ** p < 0.01 versus control group.

Article Snippet: Standard cell surface flow cytometry was used to characterize Caco-2, HCT116, HT29, SW480, and DLD1 cells with FITC (fluorescein-5-isothiocyanate)-conjugated mouse anti-human CD44 (G44-26, BD Biosciences) and PE (phycoerythrin)-conjugated mouse anti-human CD133 (AC133, Miltenyi Biotech) antibodies.

Techniques: Injection, Derivative Assay

Journal: Nature cell biology

Article Title: Akt methylation by SETDB1 promotes Akt kinase activity and oncogenic functions

doi: 10.1038/s41556-018-0261-6

Figure Lengend Snippet: a , A schematic workflow of IAP-LC-mass spectrometry (MS)/MS experiments. OVCAR5 cell lysates were proteolytically digested to perform IAP-LC-MS/MS assays. b , Alignment of MS-characterized Akt1 putative methylation residues among different species, Akt2 and Akt3. c , Immunoblot (IB) analysis of whole cell lysates (WCL) derived from DLD1- AKT1/2 −/− cells infected with indicated Akt1 encoding virus and selected with hygromycin (200 μg/ml) for 72 hrs before harvesting. Data shown represent two independent experiments. d-e , cells generated in c were subjected to colony formation and soft agar assays. The experiment was performed twice independently with three repeats, and exhibited similar results ( d ). Representative images were shown in d and relative colony numbers derived from two independent experiments were plotted in e . f-h , Cells generated in ( c ) were subjected to mouse xenograft assays. Tumor sizes were monitored ( f ), and dissected tumors were weighed ( g , h ). Error bars in f and h are mean ± s.e.m, n = 7 mice. i-k , K140R and K142R mutations of Akt1 were genetically engineered in HEK293 cells by the CRISPR/CAS9-based technique. Resulting cells were serum-starved for 12 hrs, and harvested for IB analysis at different time points after stimulation with insulin (100 nM) ( i ). The experiment was performed twice independently with similar results ( i ). Cells generated in ( i ) were assessed for proliferation ( j ) assays. The experiment in j was performed three times independently and exhibited similar results. Error bars in j are mean ± s.e.m, n = 3 independent experiments. k,l , m , Cells generated in i were subjected to colony formation ( k ), glucose uptake ( l ) and lactate production ( m ) assays. The experiment was performed twice independently with three repeats, and exhibited similar results ( k,l,m ). Relative colony numbers, glucose and lactate levels derived from two independent experiments were plotted in ( k,l,m ). Two-way ANOVA analysis was performed in ( f , j ) to calculate the P value. Detailed statistical tests are described in the Methods. Source data for e , f , h and j-m are shown in . Scanned images of unprocessed blots are shown in .

Article Snippet: Briefly, 2×10 6 DLD1- AKT1/2 −/− cells stably expressing WT or K140/142R mutant form of Akt1, or 1×10 6 A375 cells knocked down SETDB1 were injected into the flank of 8 female nude mice (NCRNU-M-M from Taconic, 4–5 weeks of age).

Techniques: Mass Spectrometry, Tandem Mass Spectroscopy, Liquid Chromatography with Mass Spectroscopy, Methylation, Western Blot, Derivative Assay, Infection, Virus, Generated, CRISPR

Journal: Nature cell biology

Article Title: Akt methylation by SETDB1 promotes Akt kinase activity and oncogenic functions

doi: 10.1038/s41556-018-0261-6

Figure Lengend Snippet: a - c , Human immortalized melanocytes (HIM) were lentivirally infected with indicated constructs, and selected with puromycin and hygromycin for 72 hrs before harvesting for IB analysis ( a ). Resulting cells were subjected to soft agar assays ( b ). d , IB analysis of CRISPR/CAS9-mediated AKT1 knockout and parental HEK293 cells which were lentivirally infected with the constructs encoding SETDB1. e , f , Cells described in d were subjected to colony formation assays ( e ). g - j , DLD1- AKT1/2 −/− cells were infected with virus encoding WT or mutated Akt1, and selected with hygromycin for 72 hrs. Resulting cells were lentivirally infected with shRNA against SETDB1 (with shCtr as a negative control) and selected with puromycin for 72 hrs, and were harvested for IB analysis ( g ), cell proliferation ( h ), colony formation and soft agar ( i ) assays. k - n , AKT1 K140/142R -edited and parental HEK293 cells were lentivirally infected with SETDB1-WT or SETDB1-H1224K encoding constructs and selected with puromycin for 72 hrs before harvesting for IB analysis ( k ). Resulting cells were subjected to proliferation ( l ) and colony formation ( m ) assays. The experiments in ( b , e , i , m ) were performed twice independently with three repeats, and exhibited similar results. Relative colony numbers derived from two independent experiments were plotted in ( c , f , j , n ). The cell proliferation assays in ( h,l ) were performed three times independently, and cell numbers were quantified in ( h , l ). Error bars are mean ± s.e.m, n = 3 independent experiments. Two-way ANOVA analysis was performed in ( h , l ) to calculate the P value. Detailed statistical tests are described in the Methods. Source data for c , f , h , j , l and n are shown in . Western-blots in ( a,g,k ) were performed twice, independently, with similar results. Scanned images of unprocessed blots are shown in .

Article Snippet: Briefly, 2×10 6 DLD1- AKT1/2 −/− cells stably expressing WT or K140/142R mutant form of Akt1, or 1×10 6 A375 cells knocked down SETDB1 were injected into the flank of 8 female nude mice (NCRNU-M-M from Taconic, 4–5 weeks of age).

Techniques: Infection, Construct, CRISPR, Knock-Out, Virus, shRNA, Negative Control, Derivative Assay, Western Blot

Journal: Nature Communications

Article Title: Engineered proteins with sensing and activating modules for automated reprogramming of cellular functions

doi: 10.1038/s41467-017-00569-6

Figure Lengend Snippet: The activation and function of SIRPα Shp2- i SNAP on phagocytosis of cancer cells. a and b Images of a representative BMDM expressing SIRPα Shp2- i SNAP before and after incubation with 10 μg ml −1 rituximab-opsonized Toledo cells a or 2 μg ml −1 cetuximab-opsonized DLD1 b at indicated time points. c The FRET ratio of SIRPα Shp2- i SNAP in the BMDM at the region around the engaging Toledo cell before, during and after phagocytosis ( n = 7, 7, 7). The same colored dots represent data obtained from the same cell. d , e Dot plot of normalized phagocytic rate (mean ± s.e.m.) of macrophages expressing different constructs as described in Fig. against rituximab-opsonized Toledo d ( n = 6, 5, 6, 6, 5) or cetuximab-opsonized DLD1 cells e ( n = 8, 8, 8, 8, 8). * P < 0.05, ** P < 0.01, *** P < 0.001 (two-sided Mann–Whitney U -test adjusted for multiple group comparison). Scale bars , 20 μm

Article Snippet: Cell line HEK293T (human embryonic kidney 293T cell line), MEF, RAW264.7 (mouse macrophage cell line), DLD1 (human colon cancer cell line), Toledo (human non-Hodgkin’s B cell lymphoma cell line) and L929 cell line (murine aneuploid fibrosarcoma cell line) were from American Tissue Culture Collection (Manassas, VA), with the authentication and the verification of the absence of mycoplasma contamination.

Techniques: Activation Assay, Expressing, Incubation, Construct, MANN-WHITNEY, Comparison